## Install bowtie2 manually on Linux

# Create and go to install directory
cd $/mainfs/scratch/kah1g14/bowtie2

# Download Ubuntu/Linux version
wget https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.4.2/bowtie2-2.4.2-sra-linux-x86_64.zip/download

# Decompress
unzip download

# Add location to system PATH
export PATH=/mainfs/scratch/kah1g14/bowtie2/bowtie2-2.4.2-sra-linux-x86_64/:$PATH


#Check installation
bowtie2 --help
